Ultimate Payment Gateway Options For WooCommerce Stores In 2025

Best Payment Gateway Options for WooCommerce Stores in 2025: A Comprehensive Overview

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Choosing the Right Payment Gateway for WooCommerce

Running a WooCommerce store in 2025 means staying ahead with a payment gateway that offers security, speed, and a seamless experience for your customers. With so many options out there, you might wonder which payment gateway fits your store’s unique needs. Let's explore the best payment gateway options specifically designed to enhance your WooCommerce store's performance and customer experience.

Key Features to Consider in a Payment Gateway

Before diving into specific gateways, understanding what features matter most can help you make a smarter choice. When selecting a payment gateway for your WooCommerce shop, keep these factors in mind:

  • Security: Ensure the gateway complies with PCI-DSS standards to protect sensitive customer data.
  • Ease of Integration: Seamless integration with WooCommerce reduces setup time and technical headaches.
  • Transaction Fees: Pay attention to transaction rates, monthly fees, and any hidden charges.
  • Global Payment Options: If you sell internationally, supporting multiple currencies and payment methods matters.
  • User Experience: A smooth checkout experience can reduce cart abandonment rates.
  • Support and Reliability: Reliable customer support and uptime ensure your store keeps running smoothly.

Top Payment Gateways to Power WooCommerce Stores in 2025

Stripe

Stripe continues to dominate as a preferred payment gateway for WooCommerce sellers. It supports a broad range of payment methods including credit cards, Apple Pay, Google Pay, and even localized payments, making it ideal for stores with a global clientele. Stripe’s WooCommerce plugin streamlines the integration, offering advanced features like subscription billing and fraud detection tools.

Its transparent pricing model and robust documentation empower both beginners and experienced store owners. Plus, Stripe handles PCI compliance, reducing your security worries.

PayPal

PayPal remains a household name and a trusted option for online shoppers worldwide. Its WooCommerce plugin makes setup painless, allowing customers quick checkout with PayPal accounts or credit cards. Many shoppers trust PayPal for its buyer protection, often increasing conversion rates.

While its fees can be slightly higher compared to some competitors, PayPal’s widespread recognition often outweighs this for stores targeting mainstream audiences.

Square

Square is an excellent choice if you operate both an online WooCommerce store and a physical retail location. It offers unified payment processing, enabling you to manage sales from multiple channels effortlessly. Square’s WooCommerce integration includes robust POS features and supports major credit cards without requiring complicated setups.

Its flat-rate pricing makes budgeting straightforward and there’s no monthly fee, which is great for small to medium-sized businesses.

Authorize.Net

For merchants prioritizing security and extensive fraud prevention, Authorize.Net remains a top contender. This gateway offers multiple layers of security, including advanced fraud detection suites and simple integration with WooCommerce through official plugins.

Authorize.Net supports recurring billing – a critical feature for subscription-based stores. Although it has a slightly more complex fee structure, the added security features justify the cost for many high-volume shops.

Amazon Pay

If your customers are Amazon users, Amazon Pay can simplify the checkout process by allowing customers to pay using their Amazon accounts. This familiarity can boost shopper confidence and reduce friction at checkout.

The WooCommerce Amazon Pay plugin integrates quickly and supports both desktop and mobile purchases. Its competitive fees and trusted brand reputation make it an excellent option for WooCommerce shops targeting a consumer-heavy market.

Specialized Payment Gateways for Niche WooCommerce Stores

Klarna

Klarna offers “buy now, pay later” options, appealing to customers who prefer flexible payment plans. This gateway can increase average order values and conversions, especially in fashion and electronics niches.

It integrates smoothly with WooCommerce and helps merchants compete by offering attractive financing options for customers.

Mollie

Mollie shines for European WooCommerce stores needing access to a wide range of local payment methods like iDEAL, SEPA Direct Debit, and Bancontact. Its easy-to-use WooCommerce plugin supports multiple currencies and languages, making it ideal for stores scaling across Europe.

How to Decide the Best Payment Gateway for Your WooCommerce Store

When selecting a payment gateway, consider your store’s size, target audience location, product type, and sales volume. A gateway that offers flexibility in payment methods and currency support can accommodate diverse customer preferences, directly impacting your sales.

Test the checkout process yourself to ensure it feels fast and effortless. Don’t forget to estimate costs carefully, including any fees related to refunds or chargebacks, as these can affect your profitability.

The payment gateway you choose for your WooCommerce store in 2025 can significantly influence your business growth and customer satisfaction. Whether you opt for Stripe’s versatility, PayPal’s popularity, Square’s omnichannel solution, or specialized options like Klarna and Mollie, prioritizing security, integration ease, and user experience will keep your store competitive and trusted.

How to Choose the Right Payment Gateway for Your WooCommerce Store

Understanding Your Store’s Payment Needs

Choosing the right payment gateway for your WooCommerce store is crucial because it impacts how smoothly your customers can complete their purchases. Before making a decision, it’s essential to understand your store’s specific needs. Think about your target audience: where are they located, and what payment methods do they prefer? A payment gateway that supports multiple currencies and popular local payment options can improve customer satisfaction and reduce cart abandonment.

Also, consider the size and volume of transactions you expect to handle. Some gateways are better suited for high-volume sales, while others may be ideal for smaller stores. Make sure the payment gateway integrates seamlessly with WooCommerce, allowing for smooth order management and reporting.

Key Features to Look For in a Payment Gateway

When evaluating different payment gateway options, focus on features that matter most to your store’s performance and security. Here are some essential criteria to keep in mind:

  • Security Measures: Look for gateways that comply with PCI DSS standards and offer features like fraud detection and encryption. This protects both your business and your customers’ sensitive data.
  • Ease of Integration: The gateway should easily connect with WooCommerce, ideally with a dedicated plugin or extension. This saves time and prevents technical issues.
  • Transaction Fees and Costs: Understand the fee structure, including setup charges, monthly fees, and per-transaction costs. Transparent pricing helps you manage your budget efficiently.
  • Payment Methods Supported: Offering popular payment options like credit/debit cards, digital wallets (such as Apple Pay or Google Pay), and alternative methods attracts more customers.
  • Currency and Country Support: If you sell internationally, the gateway should support multiple currencies and comply with regulations in your customers’ countries.
  • Checkout Experience: A fast and user-friendly checkout process can reduce cart abandonment. Some gateways allow on-site payments, while others redirect users to external pages — the choice affects user experience.
  • Customer Support: Reliable support can quickly solve any payment issues, keeping your sales running smoothly.

Several payment gateways stand out in 2025 for WooCommerce store owners due to their features and scalability. Here are some top choices:

Stripe

Stripe remains a favorite because of its robust API, making it highly customizable. It supports a wide range of payment methods, including credit cards, Apple Pay, Google Pay, and more. Stripe’s global reach and transparent fee structure make it ideal for stores targeting international customers. Since it integrates seamlessly with WooCommerce, setting it up is straightforward.

PayPal

PayPal is widely recognized and trusted by millions of users globally. It offers an easy setup process and supports payments through PayPal accounts and credit cards. Although its transaction fees can be slightly higher than some competitors, its brand recognition often encourages shoppers to complete purchases without hesitation.

Square

Square is gaining popularity, especially for stores with both online and physical sales. It offers an integrated payment solution and POS system, making it convenient for businesses managing multiple sales channels. Square provides competitive transaction fees and supports various payment methods.

Authorize.Net

Ideal for larger WooCommerce stores, Authorize.Net offers advanced security features and fraud protection. It supports multiple payment types and currencies, making it a solid choice for businesses with high transaction volumes. However, its pricing model includes setup and monthly fees, so it’s better suited for established stores.

Adyen

Adyen is a comprehensive payment platform used by many large enterprises. It offers extensive currency support and a wide array of payment methods. Adyen focuses heavily on fraud prevention and customer experience, which is beneficial for stores scaling internationally.

Balancing Cost and Convenience

While cost is a major factor in choosing a payment gateway, it’s important not to sacrifice convenience and security just to save on transaction fees. Sometimes, paying a bit more for a gateway that offers smoother integration, better customer experience, and stronger fraud protection can lead to higher revenue in the long run.

Take the time to review your payment gateway provider’s terms, including payout schedules and how disputes are handled. Fast payouts ensure healthy cash flow, and efficient dispute management minimizes losses due to chargebacks.

Testing Before Going Live

Once you narrow down your options, test your chosen payment gateway thoroughly within your WooCommerce store. Check the checkout flow on different devices and browsers, simulate transactions using test modes, and ensure notifications and order statuses are updated correctly.

Testing helps catch any user experience issues or technical glitches early, preventing frustration among your customers and reducing lost sales.

Ensuring Compliance and Future-Proofing

Keep in mind that payment industry regulations evolve. Choosing a payment gateway that stays updated with compliance standards (like PSD2 in Europe or PCI DSS globally) protects your business from penalties and legal issues. Additionally, select gateways that regularly update their software to adapt to new technologies and security threats.

By selecting a payment gateway that fits your current needs and plans for growth, your WooCommerce store can offer a reliable, secure, and seamless checkout experience that encourages customers to return.

Security Features to Look for in WooCommerce Payment Gateways

When running a WooCommerce store, choosing the right payment gateway is crucial—not just for smooth transactions, but for protecting your business and your customers from fraud and other security risks. Security is more than just an added feature; it is the backbone of trust that encourages shoppers to complete their purchases confidently. Understanding the essential security elements built into payment gateways can help you make an informed decision that keeps your store safe in 2025 and beyond.

Encryption Standards Protecting Sensitive Data

A strong payment gateway must use advanced encryption protocols to safeguard sensitive customer information, such as credit card details and personal data. Look for gateways that comply with the latest SSL (Secure Socket Layer) or TLS (Transport Layer Security) standards. These encryption methods protect communication between the customer’s browser and your website, ensuring data is unreadable to cybercriminals during transmission.

Additionally, end-to-end encryption (E2EE) is becoming an industry standard. This means the payment details are encrypted from the moment the customer enters the information until it reaches the payment processor, reducing the risk of interception at any point along the way.

PCI DSS Compliance Is a Must

The Payment Card Industry Data Security Standard (PCI DSS) is a set of security guidelines that all merchants handling card payments must follow. Payment gateways must be PCI DSS compliant, ensuring their systems meet strict criteria designed to protect cardholder data. When assessing gateways for your WooCommerce store, always verify their PCI compliance status.

Some payment gateways handle compliance checks on their end, which means as a merchant, you have less overhead managing security requirements. This is particularly helpful for store owners who want to focus on growing their business instead of navigating complex regulations.

Fraud Detection and Prevention Capabilities

One of the essential security layers in payment gateways is their ability to detect and prevent fraudulent transactions. Good payment gateway providers employ machine learning algorithms and AI tools to analyze payment patterns, flag suspicious activity, and reduce chargebacks. Here are some key features to look for:

  • Address Verification System (AVS): This tool checks the billing address provided by the customer against the one on file with the issuing bank to detect inconsistencies.
  • Card Verification Value (CVV) Checks: Requiring the CVV adds an extra layer of security by ensuring the cardholder has the physical card.
  • Velocity Checks: This process limits the number of transactions a customer can make in a certain timeframe to catch possible card testing fraud.
  • Device Fingerprinting: By identifying devices used during transactions, gateways can detect if a transaction is coming from a suspicious or blacklisted device.

Tokenization to Minimize Data Risks

Tokenization is a technology that replaces sensitive payment information with a unique string of characters, or token, which can be safely stored and processed without exposing the actual card details. Payment gateways offering tokenization services help reduce data breach risks by ensuring that even if hackers gain access to stored information, they only find meaningless tokens instead of actual payment credentials.

This feature is particularly important for WooCommerce stores that offer features like saved cards for repeat customers or subscription billing. Tokenization enables these functions without compromising security.

Two-Factor Authentication for Merchant Access

Security for the payment gateway dashboard and merchant account is just as important as transaction security. Offering or mandating two-factor authentication (2FA) adds an additional security barrier beyond just usernames and passwords. 2FA often requires entering a code from a mobile app or SMS when logging into the merchant account, significantly reducing the risk of unauthorized access from hackers.

Secure APIs and Integrations

WooCommerce stores often connect with third-party tools and services like accounting software, marketing platforms, or inventory management systems. When choosing a payment gateway, ensure that their APIs are secured using modern authentication protocols such as OAuth and support HTTPS endpoints only. Secure APIs prevent data interception or tampering during integration processes and protect your store’s overall ecosystem.

Built-In Chargeback Management

While preventing fraud is the ultimate goal, payment gateways should also provide tools for handling disputes and chargebacks securely. Features such as detailed transaction reporting, evidence submission support, and real-time notifications help you respond effectively to chargebacks. Gateways with automatic dispute management tools and clear guidelines reduce financial losses and protect your store’s reputation.

User Privacy and Data Protection

With data privacy laws tightening worldwide, it’s important to ensure the payment gateway you choose respects user privacy. Look for providers that follow regulations such as GDPR or CCPA and have transparent privacy policies. They should minimize data collection, use data only for transaction processing, and offer options to delete customer data on request.

Regular Security Updates and Monitoring

The threat landscape is constantly evolving, meaning payment gateways must actively update their systems to patch vulnerabilities and monitor for suspicious behavior. Choose payment gateways with a proven track record of timely security updates and 24/7 monitoring. This proactive approach helps mitigate emerging threats and ensures your WooCommerce store remains protected over time.

Focusing on these security features when selecting a payment gateway for your WooCommerce store is critical. Encryption standards, PCI compliance, and fraud prevention capabilities form the foundation of secure payment processing. Augment these with tokenization, two-factor authentication, secure APIs, and proactive chargeback management to build a robust defense against fraud and data breaches. Prioritizing security not only safeguards your business but also boosts customer trust, ultimately improving sales and long-term growth.

Comparing Transaction Fees and Payment Processing Speeds in 2025

When managing an online store with WooCommerce in 2025, understanding how transaction fees impact your profitability is crucial. Transaction fees are charges that payment gateways apply for each completed transaction, usually a percentage of the sale plus a fixed fee. These fees can vary widely depending on the payment processor, transaction volume, and your business location.

For example, popular payment gateways like Stripe and PayPal typically charge around 2.9% plus $0.30 per transaction in the United States. However, these rates may fluctuate based on the country or currency involved, and higher-volume businesses might negotiate better terms. Some niche payment providers offer lower fixed fees or volume discounts, which can make a substantial difference for stores processing hundreds or thousands of transactions each month.

In addition to the base transaction fee, keep an eye out for hidden costs such as:

  • Chargeback Fees: Charges applied when disputes arise from customers.
  • Cross-border Fees: Extra costs for international payments.
  • Refund Fees: Some payment gateways do not refund the processing fee after issuing a refund.

Knowing these differences upfront allows you to pick a payment processor that aligns with your budget and business model.

How Transaction Processing Speeds Affect Your WooCommerce Store

Transaction processing speed directly influences customer experience and your cash flow. A faster payment processing time means quicker access to funds and reduced chances of transaction abandonment by customers who are eager to complete their purchase.

Payment gateways now offer varying speeds for processing payments. For instance, instant payment solutions like Apple Pay and Google Pay, integrated within WooCommerce, enable near-instant authorization, which accelerates checkout completion.

Traditional processors like PayPal or Stripe often clear funds within 1-3 business days, though they sometimes offer expedited settlement options at higher fees. Newer services focused on faster settlement times may post funds to your bank account within 24 hours or less, which is invaluable for small businesses looking to maintain steady cash flow.

Factors Influencing Payment Processing Speeds

  • Payment Method: Credit cards, debit cards, digital wallets, and bank transfers each have distinct processing timeframes.
  • Currency Conversion: If currency exchange is involved, processing can take longer due to third-party handling.
  • Payment Gateway Policies: Some gateways hold funds for fraud prevention, adding delay but increasing security.
  • Bank Partnerships: The relationship between the payment gateway and banks affects clearance speed.

By understanding these variables, you can choose a payment gateway that balances speed with security and cost, tailored for your WooCommerce store's needs.

Here’s a comparison spotlighting some widely-used payment gateway options to help you make an informed decision.

  • Stripe: Charges 2.9% + $0.30 per transaction, with funds typically settling within 2 business days. Offers quick onboarding and supports a wide range of payment methods.
  • PayPal: Uses a similar fee structure to Stripe, but processing times vary by country. Paypal’s instant transfer to bank accounts is possible at an additional fee.
  • Square: Known for transparent pricing at 2.6% + $0.10 per swipe or online transaction, Square typically deposits funds in 1-2 business days, making it responsive for smaller businesses.
  • Authorize.Net: Charges a monthly fee plus 2.9% + $0.30, with settlements generally completed within 2 days. Preferred for merchants valuing customer support and advanced fraud tools.
  • Adyen: Tailored for global businesses, Adyen offers competitive rates starting as low as 1.8% in some markets, with payment processing speeds averaging 1-3 days.

Each gateway brings strengths in transaction speed, fee structure, and feature sets. Your choice should depend on your store’s sales volume, target markets, and customer preferences.

Tips to Optimize Payment Processing Costs and Times for WooCommerce Stores

To maximize your store’s financial health and customer satisfaction, consider these strategies:

  1. Analyze Your Transaction Volume: Higher volume may qualify you for custom pricing or tiered fees.
  2. Offer Multiple Payment Methods: Giving buyers choices can reduce cart abandonment and leverage faster payment options.
  3. Negotiate with Providers: Don’t hesitate to discuss fees and terms, especially if your business is growing rapidly.
  4. Leverage WooCommerce Extensions: Use plugins designed to integrate with payment gateways for seamless and fast checkout experiences.
  5. Minimize Cross-border Transactions: Where possible, localize payment options to reduce currency conversion fees and delays.

Paying careful attention to the interplay between transaction fees and processing speed will position your WooCommerce store for success in 2025 and beyond.

Ultimately, your goal is to select a payment gateway that ensures a smooth buying process for customers while keeping your operational costs in check. Making an informed choice here contributes to healthier cash flow, happier customers, and long-term growth for your online business.

Emerging Technologies Shaping Payment Processing

As WooCommerce stores evolve, so do the payment gateways powering them. The landscape of payment processing is shifting, driven by innovations that promise faster, safer, and more seamless transactions. One significant trend is the rise of artificial intelligence (AI) and machine learning in payment gateways. These technologies help detect fraudulent activities in real-time and optimize payment routes to reduce transaction failures. For WooCommerce merchants, leveraging AI-enabled gateways means enhancing security while improving the customer's checkout experience.

Blockchain technology is also gaining traction in ecommerce payments. With its decentralized ledger, blockchain offers transparency and a high level of security, which appeals to both merchants and consumers wary of fraud. WooCommerce stores integrating crypto payment options using blockchain can tap into a growing segment of digital currency users, expanding their customer base and future-proofing their payment systems.

Customer Experience Takes Center Stage

Today’s shoppers expect smooth and fast payment processes. Payment gateways are adapting by offering streamlined checkout experiences that reduce friction. One way this is happening is through embedded payment options within the store’s interface—meaning customers never leave the site during checkout. This not only improves user satisfaction but also lowers cart abandonment rates.

Mobile payments are reshaping the transaction experience as well. With mobile commerce on the rise, WooCommerce stores must support payment gateways that excel on smartphones and tablets. Apple Pay, Google Pay, and other mobile wallets allow buyers to complete purchases swiftly with biometrics or a simple tap. Ensuring compatibility with these wallets can significantly increase conversions for merchants targeting mobile shoppers.

Security and Compliance Are Non-Negotiable

With increasing cyber threats, security remains a top priority in the future of payment gateways. Expected advancements include enhanced encryption standards and multi-factor authentication becoming the norm at checkout. WooCommerce store owners should seek payment gateways that comply with the latest Payment Card Industry Data Security Standard (PCI DSS) regulations to protect customer card data.

Furthermore, regulations such as the European Union’s Strong Customer Authentication (SCA) under PSD2 require payment gateways to implement stricter verification methods. These policies are expanding globally, pushing WooCommerce store owners to choose gateways prepared to handle complex compliance requirements. Picking the right payment partner can thus prevent costly fines and protect the store’s reputation.

Expanding Global Sales with Localized Payment Methods

WooCommerce stores looking to grow internationally must capitalize on the trend of localized payment options. Consumers prefer familiar payment methods native to their countries, ranging from local credit cards to popular e-wallets and bank transfers. Payment gateways embracing a wide variety of options help merchants break down geographical barriers to sales.

For example, An African-based WooCommerce store might integrate gateways that support M-Pesa or other popular local mobile payments, while European stores could benefit from gateways that seamlessly handle SEPA direct debits. By tailoring payment solutions to target markets, WooCommerce sellers can build trust and simplify the purchase process for global customers.

Subscription Models and Recurring Payments

The subscription ecommerce model continues to grow, and payment gateways are adapting to support recurring billing effectively. WooCommerce merchants offering memberships, services, or products on a subscription basis must rely on gateways that enable hassle-free automatic billing and easy management of payment failures.

Future payment gateways will likely enhance these capabilities by providing more flexible billing intervals, dunning management tools to recover failed payments, and seamless customer portals for subscription management. This means WooCommerce stores can provide better customer service while ensuring steady revenue streams.

How WooCommerce Merchants Can Prepare

To leverage the future trends in payment gateways, WooCommerce store owners should focus on three key actions:

  • Choose flexible, scalable gateways: Opt for providers that regularly update their technology to stay ahead of security, compliance, and feature requirements.
  • Prioritize user experience: Select gateways that offer smooth, multi-device checkout options and support popular payment methods tailored to your audience.
  • Stay informed about regulations: Monitor global and regional compliance changes to ensure your payment ecosystem remains secure and legal.

By adopting these strategies, WooCommerce stores will not only streamline their payment processes but also enhance customer trust and global reach as the ecommerce landscape continues to transform.

The payment gateways of 2025 will be defined by cutting-edge technology, heightened security, and global adaptability. For WooCommerce merchants, keeping pace with these developments is essential to maintaining a competitive edge and delivering the seamless shopping experience customers demand.

Key Takeaway:

Choosing the best payment gateway for your WooCommerce store in 2025 is crucial for delivering a smooth, secure, and efficient shopping experience. With countless options available, understanding the strengths and weaknesses of each gateway helps you make an informed decision that suits your business needs. This comprehensive overview highlights the top payment gateways optimized for WooCommerce, focusing on features like ease of integration, versatility, and customer support.

When selecting the right payment gateway, consider not only the upfront costs but also the transaction fees and payment processing speeds that directly affect your store’s profitability and customer satisfaction. Some gateways offer faster settlement times, which can improve cash flow and enhance your ability to manage orders efficiently. Comparing these factors side-by-side ensures you choose a solution that aligns with your business model and sales volume.

Security is another cornerstone when choosing a payment gateway. In 2025, heightened security protocols like advanced encryption, fraud detection, and compliance with standards such as PCI DSS are non-negotiable. Selecting a gateway that prioritizes these features protects your customers’ sensitive data and builds trust, reducing chargebacks and potential financial liabilities for your store.

Looking ahead, payment gateways are evolving rapidly, adopting innovations like AI-powered fraud prevention, biometric authentication, and support for emerging payment methods such as cryptocurrencies and Buy Now, Pay Later options. By staying informed about these future trends, you can equip your WooCommerce store with a payment system that remains competitive and forthcoming in the digital retail space.

Ultimately, the best payment gateway for your WooCommerce store in 2025 balances affordability, speed, security, and cutting-edge technology. Prioritize gateways that offer seamless integration, robust security features, transparent fee structures, and are adaptable to future payment trends. This strategy will ensure your online store not only meets current customer expectations but is also well-prepared for the demands of tomorrow’s e-commerce landscape.

Conclusion

Choosing the best payment gateway for your WooCommerce store in 2025 is a critical decision that can significantly impact your business’s success. With so many options available, understanding each gateway’s strengths—from robust security features to competitive transaction fees and fast processing speeds—is essential. Remember, the right payment gateway should align with your store’s unique needs, offering a seamless checkout experience that builds trust and boosts sales.

Security cannot be overlooked; look for gateways that provide advanced fraud protection and comply with global standards to keep both you and your customers safe. At the same time, reviewing transaction fees and processing times helps you manage costs and improve cash flow efficiently. Staying informed about emerging trends, such as increased adoption of AI-powered fraud detection and integration with digital wallets, will prepare your store to adapt quickly to the evolving payment landscape.

Ultimately, the best payment gateway for your WooCommerce store combines convenience, security, and affordability, while keeping pace with future innovations. By carefully evaluating your options and considering the points discussed, you can choose a payment solution that not only meets your current demands but also supports your growth in the years ahead. As 2025 progresses, embracing these insights will empower you to create a smooth payment experience that keeps customers coming back.

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PatSaTECH
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